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2018-august-variant-analysis-workshop

From SNP and structural variant calling to GWAS.

2018_scworkshop

2019-alliance-for-global-health-and-science-makerere-university_variants

2019 Alliance for Global Health and Science, Makerere University, Variant Analysis

2019-single-cell-rna-sequencing-workshop-ucd_ucsf

2019 single cell RNA sequencing Workshop @ UCD AND UCSF

2019-snakemake-harvard-informatics-nanocourse

Intro to workflows for efficient automated data analysis, using snakemake.

2019_scworkshop

Repo for Physalia course Analysis of Single Cell RNA-Seq data

2020-advanced_single_cell_rna_seq

Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.

2020-august-advanced-scrnaseq

Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.

2020-august-intro-scrnaseq

A workshop for biologists preparing to run their first single-cell RNA Seq experiment. No prior experience in bioinformatics necessary.

2020-bioinformatics_prerequisites_workshop

An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.

2020-epigenetics_workshop

ATAC-Seq, ChIP-Seq, and whole genome bisulfite! An introduction to analyzing some of the most popular types of epigenetic data.

2020-intro_single_cell_rna_seq

A workshop for biologists preparing to run their first single-cell RNA Seq experiment. No prior experience in bioinformatics necessary.

2020-mrna_seq_workshop

Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.

2020-september-isoseq

Three day workshop offered in partnership with PacBio. Learn all about the possibilities of full length isoform sequencing from PacBio experts and experienced Core personnel!

2020-variant_analysis_workshop

From SNP and structural variant calling to GWAS. Workshop cancelled due to public health concerns.

2021-august-iso-seq

Three day workshop offered in partnership with PacBio. Learn all about the possibilities of full length isoform sequencing from PacBio experts and experienced Core personnel!

3d-plotting-in-seurat-3.0.0

This repository contains R code, with which you can create 3D tSNE plots of Seurat analyzed scRNAseq data

airbending_isoseq

altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

archive-simplesinglecell

An archived version of the simpleSingleCell repository, see https://github.com/MarioniLab/simpleSingleCell for the active version.

are212

awesome-readme

A curated list of awesome READMEs

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

barcodeswapping2017

Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".

basics

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

bcbiosinglecell

R package for bcbio single-cell RNA-seq analysis.

biocworkshops2019

The official repository of the Bioconductor 2019 Conference Workshops :confetti_ball:

bioinformatics_online

Resource list and preparation instructions for online learning and teaching for Bioinformatics

blood_rnaseq_rare_disease_paper

breastcancer_singlecell