amritmay Goto Github PK

apt

Animal Part Tracker

bcs_workshop_jan_22

Contains Material for BCS Workshop conducted in January of 2022

bootstrap4biologists

contains all files (code, data, manuscript text written using RMarkdown) of Bootstrapping for Biologists, Fieberg, J. D. H. Johnson, and K. Vitense. Resampling-based methods for biologists. PeerJ

bse658

bse658_chapter1

bse658_chapter2

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

ciatah

CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).

component-designs

Some 3D printing, laser cutting, PCBs used in the lab.

deeplearning_srib_workshop

epe

Data and code for Emotion Prediction Errors

fictrac

FicTrac: A webcam-based method for tracking spherical motion and generating fictive animal paths.

flyflix

four-cycles

jaaba

Janelia Animal Behavior Detector

learn_machine_learning_in_3_months

This is the code for "Learn Machine Learning in 3 Months" by Siraj Raval on Youtube

learnopencv

Learn OpenCV : C++ and Python Examples

medicalimageprocessing_6thsemlab

Some of the basic programs written in MATLAB illustrating image processing done on medical images.

miplab6thsem

nat

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

nat.examples

Example code for the NeuroAnatomy Toolbox (nat) R package

nat.nblast

R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.

neuprint-python

Python client utilties for interacting with the neuPrint connectome analysis service

neuromatch2023_calms21_project

This repository contains files for anaylsing data obtained from a resident-intruder assay in order to understand the cause of resident's aggresive behavior due to the intruder's behavior.

perl_bioinformatics

Bioinformatics lab experiments

preprocessingfnirs

UCLA SCN lab preprocessing function for fNIRS data, collected with NIRx

qr-code-scanner-

Real time and image qr code scanner using opencv and python.

sars-cov-2

It contains files related to COVID-19 endemic.

taci_calciumimagingplugin

telemedicine_lab

This repository contains scripts which are written in MySQL