Name: Dr. Alex M. Mawla, PhD
Type: User
Company: @Huising-Lab & @delfidiagnostics
Bio: Computational geneticist in diabetes research. Admirer of food and the perfect martini.
Twitter: alex_mawla
Location: Sacramento, CA
Blog: www.huisinglab.com
Dr. Alex M. Mawla, PhD's Projects
GitHub Actions for the R community
ENCODE ATAC-seq pipeline
:dart: ChIP peak Annotation, Comparison and Visualization
CNV calling functions and scripts
An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
Useful bash one-liners for bioinformatics.
A targeted-sequencing CNV Calling Script written in R
Data cleaning, tranformation, etc. in R.
Perl & Shell RNA Seq Pipeline
Cluster single cells and analyze cell clade relationships with colorful visualizations.
Set up commonly used 📦 components