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accex

Find the relationship between chromatin Accessibility and Expression at single-cell resolution. Repository for single-cell (ATAC-seq, RNAseq) data analysis scripts

archs4

ARCHS4 RNA-seq processing scripts and web server pages.

atac-seq

This repository contains for codes for atac-seq processing

autornaseq

An automated qsub pipeline to create count tables from RNA-Seq fastq reads

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bioinf_for_imm_2021

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

bisc577

For BISC577 HW2

chenlab-training

chip-seq

Pipeline to process ChIP-seq

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

covid19

SARS-nCoV-2 Genome assembly and analysis

ctcproject

This repository contains scripts used to process the data, generate the results and figures

gap-statistic

An implementation of the gap statistic algorithm to compute the number of clusters in a set of numerical data.

hypoxiaproject

io17

islr

An Introduction to Statistical Learning with Applications in R

islr-answers

Solutions to exercises from Introduction to Statistical Learning (ISLR 1st Edition)

learning_vcf_file

Learning the Variant Call Format

lncrnakb

Scripts for analyzing data displayed and deposited on the long non-coding RNA knowledgebase (lncRNAKB)

myxenome

Test xenome

ncbi-fetch

Automatically query & search data from GEO

rna-seq-analysis

RNAseq analysis notes from Tommy Tang

rnaseq

sbf

scworkflows

Pipleline to process different single-cell datasets

statsintro_python

Python modules and IPython Notebooks, for the book "Introduction to Statistics With Python"

useful-scripts

common useful script

wes-pipeline

Pipeline to process WES datasets

wilkelabproteinevolutiontoolbox