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alleninstituteneuroml

Example files to test interaction between models developed at the Allen Brain Institute and NeuroML

array_storage_benchmark

Compare some methods of array storage in Python (numpy)

awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

biophys_optimize

Optimization of single-cell biophysically detailed models

bluebrainprojectshowcase

A project to illustrate how models and data from the Blue Brain Project can be converted to NeuroML and PyNN

data-scientist-roadmap

Toturials coming with the "data science roadmap" picture.

datascienceresources

Open Source Data Science Resources.

ds-cheatsheets

List of Data Science Cheatsheets to rule the world

epileptor

Stochastic differential equations to simulate seizure-like events in epilepsy.

epileptor2d

EpileptorParameterInference

ghostipy

hybridlfpy

Biophysics-based prediction of LFPs from point-neuron networks

izhikevichmodel

GitHub repository for an OSB project for model from http://izhikevich.org/publications/whichmod.htm

learn-python

📚 Playground and cheatsheet for learning Python. Collection of Python scripts that are split by topics and contain code examples with explanations.

learn-python3

Jupyter notebooks for teaching/learning Python 3

lfpy

Python-module for calculation of extracellular potentials from multicompartment neuron models and networks

m1-machine-learning-test

Code for testing various M1 Chip benchmarks with TensorFlow.

neurodsp

Digital signal processing for neural time series.

neuron_burst_analysis

This project explores various machine learning algorithms and their ability to forecast Local Field Potentials (LFPs). These ML techniques range from classical shallow models to modern deep learning networks. While it is intially designed to work on LFPs, they can be used beyond brainwaves.

rl_epileptor

Provides Gym implementation of the Epileptor seizure tracking model with testing suite for stable-baselines models to detect optimal DBS intervention for individual patients.

seizure-detection-tutorials

A series of tutorials teaching the use of Python for epileptic seizure detection on open-source datasets

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

spyke

A Python application for visualizing, navigating, and spike sorting high-density multichannel neuronal extracellular waveform data

vep_atlas_shared

We will share this repository about our VEP atlas with community when our paper is out.

wave_clus

A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering