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abacbs2018

Conference notes

alexyfyf.github.io

atac-seq

ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atac_nf

Nextflow pipeline for ATAC-seq

atacseqqc

ATAC-seq Quality Control

bcell_ki67_atac_jem

ATACseq analysis for JEM paper

bioinformatics_seminar

callings-nf

GATK RNA-Seq Variant Calling in Nextflow

chip_nf

Nextflow pipeline for ChIP-seq data analysis

chipseeker

:dart:ChIP peak Annotation, Comparison and Visualization

cibersort

dalex_docs

Descriptive mAchine Learning EXplanations

dose

:mask: Disease Ontology Semantic and Enrichment analysis

epihet

EpiHet

gitsocial

Add social media icons to your GitHub README files.

isolamp

Identification of known and novel isoforms from targeted amplicon long-read sequencing

localworkshop

Workshop Slides and Website for Cross-validated Classification Workshop Held on 29 June 2018 in Sydney

machine-learning-course

R code for the assignments of Coursera machine learning course

methclone

Automatically exported from code.google.com/p/methclone

methyl_util

Useful scripts and functions for methylation analysis

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

mintie

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

netlify-hugo-academic

plyranges

A grammar of genomic data transformation

progmarker

Finding prognostic marker

reg-gen

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

rna-seq-variant-calling

Functions to call variant in RNA-Seq with Mutect2, Varscan, and Vardict

rnasik-pipe

RNAsik - more than just a pipeline

rrbs_nf

Nextflow pipeline for analyzing RRBS data from NuGen Ovation library