Comments (2)
Oh yeah, and there's definitely enough RAM (128 Gb). The command segfaults a second after it says "started mapping.." in the log.
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After much experimentation, I've narrowed it down to having "Velocyto" option in the output. I've removed it and now everything runs.
Any ideas as to why this might be happening?
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Related Issues (20)
- Segmentation fault (core dumped)
- STAR alignments generate different counts: Full genome vs Split genome
- fatal error, cannot create output file for unmapped.out.mate1.thread0
- Possible to implement special treatment of multi-gene reads for BCR/TCR genes?
- [Version 2.7.11b] - Error running 'make' command HOT 6
- killed after "...starting to generate Genome files"
- Problem with reading FASTQ files
- secondary alignment bit in flag not set for unmapped mate of a pair with the other mate mapped
- Parameters for 10x 5' alignment HOT 1
- Chimeric reads very high
- soloUMIfiltering distribution tracking?
- --quantMode GeneCounts output lacks two T-cell receptor genes compared to htseq-count
- STAR hangs at 300% CPU
- Some reads do not seem to be assigned to genes correctly by starsolo
- Alignement of viral genome with reads from infected host
- Fatal INPUT FILE error, no exon lines in the GTF file
- [2.7.10b] Read length in FATAL ERROR message does not match actual read length HOT 2
- STARSolo, alignment of Scell from different lanes
- FATAL ERROR in input read file: the total length of barcode sequence is 151 not equal to expected 28, and also not mapped reads HOT 1
- STARsolo for chimeric reads
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