alegione Goto Github PK

alegione.github.io

The academic website of Dr Alistair Legione

alegione.github.io_old

My personal website

bash-pipelines

A bunch of bash scripts, R scripts that they use, and other docs. Many are computer specific and not useful for others.

biodemo

A demo project (melbourne bioinformatics workshop)

codonshuffle

divpropipe

dumplingsquid

Classify metagenomic reads based on miniture databases

git-tutorial

Notes for a workshop on using git and github

hapflow

Visualise interstrain recombination from environmental samples.

homebrew-bioinformatics-linux

:beer: :penguin: Homebrew formulae for bioinformatics software only available for Linux

hpc_classifier

A place to put scripts for classification of long reads using the Unimelb Spartan high performance computer

hpcshells

Advanced Linux commands, regular expressions, shell scripting, and their integration into SLURM scripts.

ideel

Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes

lab_calculators

A collection of R shiny apps for various calculators

magsim

Scripts for testing several alignment tools for metagenomic assemblies

mapgraph

Some scripts for plotting depth of read coverage against references

microlabr

A complilation of tools useful for a microbiology laboratory

nanodropplotter

A tool to view multiple NanoDrop results

nba-game-of-the-day

A shiny web application that ranks daily NBA games for your viewing pleasure

office-macros

A collection of macros for microsoft office

pharokka-gcode

fast phage annotation program

porechop

adapter trimmer for Oxford Nanopore reads

pydeel

pythontraining

qiime

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

r-string-calc

A function to do simple arithmetic from strings

r-web-scrape

scholarplot

Shiny web tool for visualising and exporting google scholar data

scripts

Scripts developped over time and (sometimes) still usefull

simple_site

Minimal tutorial on making a simple website with GitHub Pages