Name: Alistair Legione
Type: User
Bio: Microbiology/virology, Faculty of Veterinary and Agricultural Sciences, University of Melbourne.
Bashing together pipelines, and making my Excel look Shiny
Twitter: ALegione
Location: University of Melbourne, Australia
Blog: https://alegione.github.io/
Alistair Legione's Projects
The academic website of Dr Alistair Legione
My personal website
A bunch of bash scripts, R scripts that they use, and other docs. Many are computer specific and not useful for others.
A demo project (melbourne bioinformatics workshop)
Classify metagenomic reads based on miniture databases
Notes for a workshop on using git and github
Visualise interstrain recombination from environmental samples.
:beer: :penguin: Homebrew formulae for bioinformatics software only available for Linux
A place to put scripts for classification of long reads using the Unimelb Spartan high performance computer
Advanced Linux commands, regular expressions, shell scripting, and their integration into SLURM scripts.
Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
A collection of R shiny apps for various calculators
Scripts for testing several alignment tools for metagenomic assemblies
Some scripts for plotting depth of read coverage against references
A complilation of tools useful for a microbiology laboratory
A tool to view multiple NanoDrop results
A shiny web application that ranks daily NBA games for your viewing pleasure
A collection of macros for microsoft office
fast phage annotation program
adapter trimmer for Oxford Nanopore reads
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
A function to do simple arithmetic from strings
Shiny web tool for visualising and exporting google scholar data
Scripts developped over time and (sometimes) still usefull
Minimal tutorial on making a simple website with GitHub Pages