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alasdairgray.github.io

biohackathon2022-bioschemas-consumer

An ETL pipeline to construct IDPcentral Knowledge Graph using Bioschemas JSON-LD data feeds

bioschemas-github-markup-example

Repository hosting examples of markup added to GitHub pages, mainly used for tutorials

bioschemas.github.io

Files for the Bioschemas website.

cc-cert-core

Content outline for new Creative Commons Certification programs

content

Experimental repo of bio.tools content for augmentation with other sources of tool information

creatingtechingmaterial

elixir-tox

Repository to organize the further development of the Community Proposal to ELIXIR.

federatedphacts

Experiments in federated querying

governance

The governance process and model for Project Jupyter

guidelines

Guidelines, templates and modeling patterns

hcls-stats-queries

Queries for computing the statistics reported in the Health Care and Life Sciences Dataset Descriptions Community profile. The link below takes you to a grlc.io API where you can use the queries over your own endpoint.

hclsvalidator

Validator for HCLS dataset descriptions

iwatt

jupyterhackathonedinburgh

Resources from the Social Science Goldrush Jupyter Hackathon 29th of May University of Edinburgh

lensvisualisation

Exploring techniques for visualising the links activated by a lens.

linkml

Linked Open Data Modeling Language

matlab-novice-inflammation

Software Carpentry introduction to MATLAB for novices using inflammation data.

members

Members of the Knowledge Graphs Interest Group at the Alan Turing Institute

mum-benchmark

Automatically exported from code.google.com/p/mum-benchmark

mum-results-processing

Processes the results files generated by the MUM benchmark and outputs gnuplots of the data

nanopub

content of the nanopub.org website, including wordpress extensions, styles, guidelines, validator and landmark tool

nanopub-server

A simple server to publish nanopublications

nanotopicmapping

More than 10 Million of nanopublications have been published in life Sciences domain across over the world. We took 4.8 Million from them for our analysis. They are from neXtProt, DisGeNET, and Wikipathways datasets. They do not provide the interoperability between the datasets. Here we proposd the framework that brings the nanopublications together on particular topic with timeline of discourse.

ni-dm

NIDASH Data Model: a library for neuroimaging data sharing

oops-plugin

A plugin for the Protégé ontology editor software that evaluates ontologies to detect the use of bad practices.

ops-irs-prototype

A prototype service for retrieving equivalent identifiers dependent upon their context

rdfshape

RDF Validator using Shape Expressions

ro-crate

Research Object Crate

rsp-ql

An home of RSP-QL syntax and semantics discussion