akshayayadav Goto Github PK

20181012-unix-basic

Repository for 2018 FAll BCBGSO Introductory Unix Workshop

20181012-unix-basic-materials

Repository of supporting materials for the 2018 Fall BCBGSO Basic Unix workshop

20181013-unix-adv

Repository for the BCBGSO Fall 2018 Advanced Unix Workshop

20181013-unix-adv-materials

Contains powerpoints, cheatsheets, etc for 2018 BCBGSO Fall Advanced Unix Workshop

ang-machine-learning-course

Course materials for Andrew Ng machine learning course

bbox1_rnaseq_analysis

BBOX1 rnaseq analysis

bern

A neural named entity recognition and multi-type normalization tool for biomedical text mining

bert

TensorFlow code and pre-trained models for BERT

bert-custom-ner

Repository for BERT-based custom NER pipeline

bert-custom-re

Repo of customized BERT-based Relation Extraction for biomedical data

bert-relation-extraction

PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper

biobert

BioBERT: a pre-trained biomedical language representation model

biobert_embedding

Token and Sentence level embeddings from BioBERT model

bioinformatics-utils

bioinformatics_ossu

:microscope: Path to a free self-taught education in Bioinformatics!

blog

Repository for the blogs

bluebert

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

clade-based-family-analysis

monophyletic clade based analysis of family trees using ete

container_camp_workshop_2019

CyVerse Container Camp 2019

deep_learning_examples

Examples of using deep learning in Bioinformatics

deeplearning-biology

A list of deep learning implementations in biology

family-sets-comparison-tool

Container for comparing two sets of gene families

genefamily-domain-composition-cosine-scoring

Container for domain composition based genefamily scoring

genefamily-domain-composition-tool

Tool of analyzing domain compositions of gene families

genefamily-sets-comparison-tool

Tool for comparing two sets of gene families

genefamily-species-composition-score

github-project-management-example

hmmsearch-hmmscan-family-merging

Container for HMMSEARCH-HMMSCAN based family merging workflow

invitae-exercise

Repository containing solution for Bioinformatics Exercise B.2

isimp

A sentence simplification system