akre96 Goto Github PK

akre96.github.io

Samir Akre's Personal Website

atom_local

atom_resin

babeproject

This project is an analysis software for the Baby Associated Built Environment Microbiome Project (BABE Project). Inputs are the temperature/humidity and beam-break data from our sensors.

bletostridesight

Interface to interact with StrideSight prototype and collect data

bus_tumor_classification

cdc_overdose

Code for analysis and results generated in the paper "COVID-19 and the Drug Overdose Crisis: Uncovering the Deadliest Months in the United States, January-July 2020" Published in AJPH 2021

covidcompare

dgc_migraine_study

Analysis of Depression Grand Challenge migraine study

genediagrams

This application is designed to make the process of drawing Gene Circuits easier and to scale. This project was created for and funded by the Mills Lab at UC-Davis.

hspc_project

Human Stem and Progenitor Cell Project Barcode Analysis

igem_cbcr-model

Deployable Flask App version of CBCR Model

igemmatch

iGem Collaboration website

mhealth-feature-generation

nextflow_test

onecodextakehome

Scripts Used in take-home task for OneCodex

opthamology_image_processing

UCLA 224B Course Code

predict_selfreport_items

Predict self-report items from digital sensing data - OPTIMA study @UCLA

profile-hugo

pyvenn

2 ~ 6 sets venn diagram for python

react-grid-heatmap

A react component for heatmap visualisation in grid layout

resistblast

This script is intended to match potential antibiotic resistance found in WGS sample to the sequence in the WGS data and run a blast search to determine what species it may have come from. Returns a CSV file of the data. Designed for use at the Mills Lab @ UC Davis.

roastprofiler

spaghetticode

Misc. code from different projects

unite_ditsy_compare