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bixcop-2021-python

Simple to moderate python programming tasks with a focus in bioinformatics

cazyme2020

Prediction of Oral and gut microbial CAZymes

configs

Config files used to define parameters specific to compute environments at different Institutions

debaser-angular

debaser interface generated using angular 2

debaser-galaxy

debaser (galaxy version powered by planemo)

debaser-rod-iita

githubgraduation-2021

Join the GitHub Graduation Yearbook and "walk the stage" on June 5.

ilri-africa-cdc-training

ml

Learning ML

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nascent

Nascent Transcription Processing Pipeline

ngs-academy-africa-nfcore

Advanced Training in Bioinformatics Workflows: Beginner - Intermediate level Bioinformaticians working with next-generation sequencing data in East-Africa.

rvfv-amplicon-seq

A simple pipeline for Rift Valley fever virus consensus genome generation from amplicon sequencing

rvfv-phylogeo

Phylogenetic, phylodynamic and phylogeography of Rift Valley fever virus in Africa and the Arabian Peninsula

rvfv-primer-schemes

Primer schemes for Rift Valley fever virus genome epidemiology

rvfv-typing-tutorial

Lineage assignment of RVFV genomic sequences

rvfvtyping

Classification and phylogenetic lineage assignment of Rift Valley fever virus consensus genomes using the glycoprotein Gn/G2 gene found within the M-segment of the virus genome

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

sars-cov-2-genomics-and-bioinformatics-2024

An open-source project for creating online courses, built by P2PU

training-material

A collection of Galaxy-related training material

viclara

viclara is a bioinformatics analysis pipeline for classification and reference guided assembly of segmented viruses from metagenomics reads obtained on Illumina platform.