Comments (15)
Now #16 is fixed, I will address this next week.
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Extension now available on all platform: http://slicer.cdash.org/index.php?project=Slicer4&filtercount=1&showfilters=1&field1=buildname&compare1=63&value1=Radiomics
After releasing Slicer 4.8.1, it will also be available with the stable release.
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Until this is fixed, the file to change:
C:/Users/username/AppData/Roaming/NA-MIC/Extensions-revision/SlicerRadiomics/lib/site-packages/radiomics/featureextractor.py
Where revision is something like 26083 depending on the nightly version of Slicer.
Line 9 should be changed from:
import pykwalify.core
to:
# import pykwalify.core
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See user discussion here: https://discourse.slicer.org/t/qunatitative-features-with-eeterogeneitycad/518/8
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@JoostJM was this issue fixed by d0a77c?
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@pieper, d0a77c presents a temporary workaround. Additionally, that fix won't take effect until the extension is rebuilt and repackaged.
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Joost, the extension is rebuilt and packaged automatically on each source code update.
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I just tested the current nightly build on windows (2017-07-16) and confirmed that the Radiomics extension is working as expected. So the workaround is in place but the underlying issue remains.
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@jcfr, what is the status of this issue?
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I have installed radiomics extension,but the following bug was always appeared. How to resolve the problem?
File "C:/Users/Administrator/AppData/Roaming/NA-MIC/Extensions-26309/SlicerRadiomics/lib/Slicer-4.7/qt-scripted-modules/SlicerRadiomics.py", line 535, in run
enabledImageTypes)
File "C:/Users/Administrator/AppData/Roaming/NA-MIC/Extensions-26309/SlicerRadiomics/lib/Slicer-4.7/qt-scripted-modules/SlicerRadiomics.py", line 448, in calculateFeatures
extractor.disableAllImagesTypes()
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I did not find import "pykwalify.core" in file featureextractor
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@renjiliang, That's correct, pykwalify.core
is currently disabled due to this issue. We are working on a fix. The error you received is unrelated and due to a typo bug in the SlicerRadiomics Code. I corrected this just now in 8c4ffc7. This change will be incorporated in tonights nightly build of slicer, so to fix it, reinstall the latest nightly of slicer tomorrow, or apply the fix yourself in the SlicerRadiomics
python file, which is located somewhere in C:\Users\<USER>\AppData\Roaming\NA-MIC\Extensions-26442\SlicerRadiomics\Lib\Slicer-4.7\qt-scripted-modules
(It is possible that the extensions number is different, but the NA-MIC folder contains all your installed Slicer Extensions, including SlicerRadiomics).
from slicerradiomics.
It looks like now build is failing because a warning is interpreted as an error:
http://slicer.cdash.org/viewBuildError.php?buildid=1148769
D:\D\N\Slicer-1-build\python-install\Lib\site-packages\pip\commands\install.py:194: UserWarning:
Disabling all use of wheels due to the use of --build-options / --global-options / --install-options.
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Yes.
I have been working on address this, it will be fixed later today.
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Related Issues (20)
- Not working in Slicer 4.10 stable release nor 4.11 nightly build with Windows 7. HOT 5
- Slicer Radiomics HOT 1
- Batch Processing HOT 5
- voxel based feature extraction HOT 1
- SlicerRadiomics extension not available for Slicer 4.11.0 on Mac OS HOT 9
- Feature calculation failed on windows HOT 2
- Resampling and LoG filtering fail when done at the same time. HOT 2
- How to create Mask file of segmentation? HOT 2
- Radiomics does not work in latest stable release of Slicer HOT 31
- Install SlicerRadiomics From 3D Slicer on MAC 10.15.5 HOT 3
- No module named radiomics
- Unable to install SlicerRadiomics on Windows from ExtensionsManager
- Cannot use the module with input mask defined by a segmentation node
- Fix extension build HOT 2
- Grant maintainer access to slicer core developers HOT 4
- Add support for additional image transformations in pyradiomics
- Add support for BATCH mode
- SlicerRadiomics unavailable for macOS since Slicer Preview 5.3.0 as of 2023-03-31 HOT 19
- SlicerRadiomics extension cannot be found on mac HOT 2
- Add UI control for normalization option
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