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ahhgust's Projects

exome2proteome icon exome2proteome

Converts exome sequencing data into predicted proteins in FASTA format. It does so retaining *phase* (CIS variation)

fishandsnpchips icon fishandsnpchips

Estimates genotype likelihoods for Illumina SNP-chip data. Designed for low-template samples

ksw2 icon ksw2

Global alignment and alignment extension

mmdit icon mmdit

Mitochondrial mixture analysis in R

mpsonwindows icon mpsonwindows

Standard next generation / massively parallel sequencing tools compiled for windows. Includes samtools, bwa and tabix!

neutralome icon neutralome

Source code necessary to model diversity throughout the genome.

peptidelr icon peptidelr

Semicontinuous likelihood ratios for peptides!

pycision icon pycision

Parses bam files and extracts haplotypes

samtools icon samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

seqlib icon seqlib

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

singularity icon singularity

SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.

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