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aeverall's Projects

bigsnpr icon bigsnpr

R package for the analysis of massive SNP arrays.

mlsandpit icon mlsandpit

Demo scripts and notebooks for Machine Learning algorithms.

mwtrace icon mwtrace

Tracer Density of Milky Way populations using Gaia astrometry.

resampleglm icon resampleglm

Fit GLMs to data using resampling to reduce type I error.

seestar icon seestar

Creates a selection function given age, metallicity and mass for stellar surveys.

sigprofilerassignment icon sigprofilerassignment

Mutational signature attribution and decomposition tool with custom inclusion and exclusion rules

sigprofilerextractor icon sigprofilerextractor

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

simanneal icon simanneal

Python module for Simulated Annealing optimization

tensorflow icon tensorflow

Computation using data flow graphs for scalable machine learning

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