Comments (1)
A friend helped me sort this out:
"The SCope website generates loom files using a unique implementation that deviates from standard loom. To access the SCope loom data with the python library, you'll need to use the SCopeLoomR package in R. Once the data is extracted, you can save it as an anndata object for use in scanpy."
https://github.com/aertslab/SCopeLoomR
https://rdrr.io/github/aertslab/SCopeLoomR/
from scope.
Related Issues (20)
- Search queries like "batch" and "All clusters" does not "lock" grouped search entry bars
- Convert client components/pages to TypeScript
- Unify the "Gene" and "Compare" tabs
- Cannot change AUC threshold on Regulon page
- Validate assumptions about Loom file structure before ingesting as correct
- ORCID login status is not consistent across components HOT 1
- Scope website down? HOT 1
- Custom colors for annotations
- [BUG] Removing Log and moving color bar in numerical metadata breaks metadata HOT 1
- 'Regulon' tab not visible
- Dockerfile fails to compile (poetry install, step 27) HOT 9
- Gene set scoring
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- Add clustering in scope web version doesn't respond..?
- Strecthed 'Compare' tab views when having large metadata
- SCope web tool not showing embeddings HOT 1
- SCope Genes in Regulon Tab Broken: No rows HOT 2
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from scope.