Comments (1)
Try to use pySCENIC instead of SCENIC (deprecated).
Container versions are available:
https://pyscenic.readthedocs.io/en/latest/installation.html#docker-podman-and-singularity-apptainer-images
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Related Issues (20)
- Warning in .AUCell_calcAUC(geneSets = geneSets, rankings = rankings, nCores = nCores,
- error in plot_eRegulon function for downstream analysis
- Error in running runSCENIC_3_scoreCells() and AUCell_buildRankings() functions. HOT 3
- RSS top eRegulon jaccard heatmap
- run_SCENIC_2_createRegulons(): Warning
- Error message during running runSCENIC_3_scoreCells() HOT 6
- Error Running runGenie3 in R HOT 3
- Mis-labelled motifs - SCENIC+ HOT 1
- Details about plot SCENIC results with cytoscape HOT 1
- Scenic on HPC HOT 1
- Could not initialize SCENIC HOT 1
- what is the difference between "motifAnnotations" and "motifAnnotations_hgnc_v9" , and what impact will it have on the results?
- could not find function "AUCell_createViewerApp" HOT 2
- Running GRNBoost as a batch job
- Error in file(con, "w") : all connections are in use HOT 2
- No questions here, please! runSCENIC_3_scoreCells :Error in signif(trhAssignment, 3)
- shiny::runApp NOT FOUND HOT 1
- Bioconductor version HOT 2
- initializeScenic(org="hgnc", dbDir="cisTarget_databases", nCores=1)
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