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adigenova's Projects

dcbi1302 icon dcbi1302

Advance programming for Bioengineering PhD

fast-sg icon fast-sg

Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.

fastmin-sg icon fastmin-sg

FAST-SG idea implemented using minimizer and chaining with the minimap2 API.

intervalmiss icon intervalmiss

Ultra-fast detection and split of miss-assembled contigs using pair-end reads.

liger icon liger

Synthetic Scaffolding Graph construction, Overlaps, Scaffolding, Validation, Gap filling and Polishing

racon icon racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

seqtk icon seqtk

Toolkit for processing sequences in FASTA/Q formats

tpp icon tpp

Curso Introductorio de Python para alumnos de Tercero y cuarto Medio

trio_binning icon trio_binning

Programs implementing the trio-binning genome assembly method

uohdb icon uohdb

Repository for database course UOH

uohpmd icon uohpmd

Curso Procesamiento Masivo de Datos (PMD) UOH 2022

wengan icon wengan

An accurate and ultra-fast hybrid genome assembler

wengan_demo icon wengan_demo

This repository contains a test dataset and the instructions to run Wengan (version 0.1).

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