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Adam English's Projects

acebinf icon acebinf

Collection of simple utilities used when building bioinformatics tools

adotto icon adotto

Working space for the GIAB TR benchmarking project

kanpig icon kanpig

Kmer Analysis of Pileups for Genotyping

laytr icon laytr

Library for variant benchmarking stratification

mebyfrac icon mebyfrac

Leveraging Fractal-like Rules of DNA for QC

paragraph icon paragraph

Graph realignment tools for structural variants

regioners icon regioners

A rust implementation of regioneR for interval overlap permutation testing

tdb icon tdb

Tandem repeat database and analysis queries

truvari icon truvari

Structural variant toolkit for VCFs

truvaridata icon truvaridata

Data and Scripts relevant to the development and benchmarking of truvari

usable_vcf icon usable_vcf

Run multiple programs to check if a VCF is usable

utmos icon utmos

Maximum-coverage algorithm for genomic variants

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