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A. Darius L.'s Projects

blast_and_infer_subfeatures icon blast_and_infer_subfeatures

A (quite messy but usable) Perl program to infer gene and its subfeatures on a (longer, not sure with shorter) suspected corresponding gene sequence in a new, but almost identical genome. Uses NCBI BLAST+ whenever possible.

bt4 icon bt4

learning bootstrap4

drupal-chado-tripal--backupper icon drupal-chado-tripal--backupper

A set of (meant to be interactive) shell scripts (and maybe in the future, C or other programs), to backup files in the server root directory and database dumps, related to the operation of the trio Drupal-Chado-Tripal as seen in http://gmod.org/wiki/Tripal_Tutorial_(v1.0)

http_basic_logout icon http_basic_logout

A set of files for HTTP Basic logout mechanism. Specifically designed for the internal project I am working on with my company but you can easily customize it to suit your needs.

map_variance_in_new_to_orig_genome icon map_variance_in_new_to_orig_genome

This is a program to map variances that were retrieved on a created, mostly similar genome, to the origin/base genome. Takes in variances (SNPs and INDELs only for now) in VCF format, gets its nearby X sequences to the left and right and these are BLAST-ed into the original genome. Best hit is selcted and the sequence is reduced again to to infer the location in new genome.

synacy-coding-exam-senior icon synacy-coding-exam-senior

Just a repository for tracking version changes for recruitment exam of synacy.com for position "enior Software Engineer with Perl experience (distributed team)"

tread_irri_test icon tread_irri_test

Test Repository of Agri Data (TReAD) - A prototype management & storage system for agricultural research survey data. Produced as part of recruitment process by the International Rice Research Institue (IRRI).

vcf_to_gff3 icon vcf_to_gff3

VCF TO GFF3 Converter | Sharing this since I haven't found one that works for me. This one (https://gist.github.com/danwiththeplan/3989411) didn't. I think there's one for iplant but it's not public.

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