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Brian-Luke avatar Brian-Luke commented on August 23, 2024

If you take the example input (gfa_test.fasta) and change the first line from

Test Sequence
to
chr1
and then copy all of the lines to the end of the file (without a blank line between them) and change the second header line to
chr2
and run this file, you will see that it works fine using the default parameters
gfa -skipWGET -seq (input fasta file) -out (prefix for output files).

Please realize that the DNA sequence is by default limited to 300,000,000 nucleotides. If your "chr1" is larger then that, you will have to edit the line
#define MAX_DNA 300000000
in gfa.h and recompile the program.

from non-b_gfa.

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