Comments (2)
Palmprints are here: https://github.com/rcedgar/palmdb, you can search a palmprint to find SRA accessions here: https://serratus.io/palmid, in some cases complete contigs may be found in our assemblies (there is currently no index into the assemblies so some manual checking is needed for this last step).
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Thanks very much!
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Related Issues (20)
- Please Run SRA SRR11806578
- Please run SRR12432009
- assemblies of 1k random SRAs from novel_id90.fa HOT 10
- all new nido/cov assemblies HOT 2
- TODO: Case study for CoV in environmental samples
- Update contributors list HOT 1
- migrate RdRP data to lovelywater HOT 5
- all RdRP+ macro/micro contigs HOT 1
- Migrate improved CoV assemblies to lovelywater, and annotate them
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- Brief SRA metadata for a subset of SRR ids HOT 3
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- Phylogenetic and taxonomic analyses for any viral contigs HOT 5
- Hello! Many parts of this tutorial “Running Serratus”are confusing to me. Could you be more specific? HOT 6
- all serratus assemblies (60k accessions) HOT 13
- Speed up SRA download: aws s3 cp or sratoolkit? HOT 7
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