Comments (6)
When did you install bumbl
? I just updated it earlier this week, although I'm not sure it would change anything in this example...
The warning about not being able to find starting values sounds like it's coming from glm()
and I'm not sure why.
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Just installed today. It's as if the glm()
call is looking for a column named "tau" instead of "week"
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I'm at EntSoc this week (any chance you're here too?), but I'll take a look at it when I get back and see if I can reproduce it. Thanks for trying it out!
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Unfortunately I am not going this year - opted out to stay and finish thesis! No problem, I'll watch this thread. Feel free to holler at my if you want some additional beta testing - I told Elizabeth at BOMBUSS I'd be happy to do so.
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Note to self: Check out glm2
package and see if it might be more stable to finding starting values.
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I'm not sure, but I suspect it has something to do with you having two data points of mass for each week. Try just using date as the response variable and time variable. I agree the "unknown column tau" is misleading, so I'm going to work on a better error message for situations when the underlying glm() fails.
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Related Issues (20)
- Add column for convergence HOT 1
- Implicit assumption of colony ID column name in bumbl() HOT 1
- Handle dates correctly HOT 1
- Remove `.nb` versions of bumbl() and brkpt()
- Add contributions.md
- Add a timeline to README
- Warning when number of time steps >> number of tau values HOT 1
- Column name conflicts with covariates when agument = TRUE
- Should plots be marginal effects plots? HOT 1
- Citation should include Eric as a co-author HOT 1
- allow user to supply vector of tau, one value per colony HOT 2
- use optim() for finding optimal value of switchpoint HOT 1
- Fit switchpoint model with all colonies and covariates (rework bumbl() internals) HOT 3
- Inconsistency between vignette and code: should time column be edited to be tau when time > tau? HOT 3
- Add Zenodo DOI to package citation
- bumbl() assumes there is a switchpoint, doesn't test for one
- hex logo HOT 1
- remove `broom` dependency
- Convergence errors with `brkpt()` using OpenBLAS HOT 1
- Release bumbl 1.0.3
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