aakhmetz Goto Github PK

akhmhoch2015scripts

(need to be done) Supporting materials for eLife study Akhmetzhanov AR, Hochberg ME (2015) "Dynamics of preventive vs post-diagnostic cancer control using low-impact measures" https://elifesciences.org/articles/06266

akhmkim2018biorxivscripts

Supporting materials for a modeling study on treatment strategies of melanoma tumours with bistable dynamics of resistance.

akhmkim2019scripts

Supporting materials for Akhmetzhanov AR, Kim JW, Sullivan R, Beckman RA, Tamayo P, Yeang CH 2019 "Modelling bistable tumour population dynamics to design effective treatment strategies." Journal of Theoretical Biology

covid19-cats-story

Rising evidence of COVID-19 transmission potential to and between animals: do we need to be concerned? medrxiv 2020

covid19-japan-reff

covid19-reff-taiwan-2021

Supporting materials for Akhmetzhanov AR et al. Transmission dynamics and effectiveness of control measures during COVID-19 surge, Taiwan, April–August 2021. Emerg Infect Dis. 2022 Oct

covid19-replication-he-et-al-2020

covid19_generationtime

Data and code to accompany publication once peer reviewed. Preprint available on medRxiv

covid19incidencehokkaidofeb2020

Estimating the real incidence of COVID-19 in Hokkaido, Japan, February-March 2020

covid19incubationperiod

Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)

covid19realtimecfr

Study on real-time assesment of case fatality risk for novel coronavirus (COVID-19) infection

covid19serialinterval

Supporting materials for Nishiura et al "Serial interval of novel coronavirus (COVID-19) infections" International journal of infectious diseases 2020

diphtheriarohingya2017

Code that was used for simulations of PeerJ study Matsuyama R, Akhmetzhanov AR, et al (2018) "Uncertainty and sensitivity analysis of the basic reproduction number of diphtheria: A case study of Rohingya refugee camp in Bangladesh, November-December 2017" http://dx.doi.org/10.7717/peerj.4583

ebolaforecast2019epidemics

Supporting materials for Akhmetzhanov AR, Lee H, Jung SM, Kayano T, Yuan B, Nishiura H (2019) "Analyzing and forecasting the Ebola incidence in North Kivu, the Democratic Republic of the Congo from 2018-19 in real time" Epidemics

excess-mortality-in-us-2020

Code snippets

foodpoisoning-in-taiwan-2024

japan-covid19-end-of-outbreak-2020

Supporting materials for Linton NM et al IJID 2021.

lassa2018scripts

Quantifying the seasonal drivers of transmission for Lassa fever in Nigeria

measlesjapan2018

Supporting materials for Akhmetzhanov AR, Lee H, Jung S-M, et al (2018) Real time forecasting of measles using generation-dependent mathematical model in Japan. PLoS Currents Outbreaks

mpox-in-mainlandchina-2023

mpox-incubationperiodserialinterval-meta2023

(under construction)

omicron-incper-taiwan-2023

pcr-profile

public

taiwan-covid-hoteloutbreak-dec2021

taiwan-covid19-end-of-outbreak-janfeb2021

Supporting materials for Akhmetzhanov et al 2021

who_wpsar_outbreak-of-measles-in-taiwan-and-japan-2018

Supporting materials for Shimizu et al 2018 WPSAR