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ak-de-bigru

Improving Response Selection in Multi-turn Dialogue Systems by Incorporating Domain Knowledge

amazon-omics-tutorials

argonljmd

etal

Diablo2 Etal Repository

hpcleap_dnds

Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioinformatics information available, then allow the user to compare selective pressures acting along the protein sequence vs. an overlay of functional protein domain annotations.

hpcleap_gemm

hpcleap_gpu

hpcleap_malarvsnon

hpcleap_md

Molecular Dynamics simulation (HPC-LEAP workshop 1)

hpcleap_neuro

Neuroscience practical excercises in HPC-LEAP Thematic workshop: Computational Biology

hpcleap_obp

hpcleap_ppi

Protein-protein interactions predicted between proteins of Anopheles gambiae, Plasmodium falciparum and between the proteins of the two species

hpcleap_swe-mpi

Tsunami simulations in 3D (with 2D visual output showing +1D via colour).

isatab-generators

parsers for third-party PopBio data to munge into ISA-Tab, original author Andrew Brockman

justagaan

Playing with AIs

kaks_error_bars

A simple script and example data file to draw barplots of multiple protein's pairwise dN/dS values, with error bars!

learn_ml

Templates and Examples of Machine Learning programs. Topics covered in README.

lilgoth_data

microbiota

Microbiome analysis

nonredcre_tested

Thoroughly tested prototype of multi-species, non-redundant, de novo CRE discovery pipeline. Publishable database and web-service in progress.

pycogent

PyCogent: Official repository for software and unit tests

recession

splinterbotppi

Scrapes iPfam and Uniprot for co-complex protein-protein interactions in Anopheles gambiae and Plasmodium falciparum.

swe_localtimesteppingscheme

local time stepping scheme for solving shallow water equation

t-sne_testing

Testing dimensionality reduction techniques useful for VB Expression map, turning into a 1D indexable vector

telomeretimebomb

textworld

​TextWorld is a sandbox learning environment for the training and evaluation of reinforcement learning (RL) agents on text-based games.

vbdev

vigilab_intergenesharegff

(1) Parse in a GFF file, (2) Filter only rows matching a specific type (e.g. transcript), (3) Then print a new GFF file whose "start" and "end" fields are expanded to include intergenic regions whose sharing distribution differs according to pairwise strand orientations: (i) 1/3:2/3 ratio for tail:head (+,+) strands, (ii) 2/3:1/3 for head:tail strands (-,-), and (iii) 1/2:1/2 for head:head (-,+) and tail:tail (+,-) strands