Name: Ryan Young
Type: User
Company: Brandeis University
Bio: ๐ป Ph.D., Computational/Sys Neuro ||
Machine Learning ๐ฆพ, Statistics, and Applied Math โ, and Data Science
Twitter: synapticsage
Location: Boston, Massachusetts
Blog: http://ryanyoung.io
Ryan Young's Projects
Lab for Innovation Science at Harvard data science competition. My solution scored around the top 15. I had planned to try other things, but I used only 1/3 of the allowed competition time -- and hence did not explore advanced feature engineering in the winning solutions. But interestingly, this solution was similar to winning solutions.
Bookmarking system for Bash and Zsh
3D brain models for pubs and presentations
Implemented Tetris at the command-line terminal (pure text characters, no GUI) in C++ for fun. About a week of code. Originally tested in PowerShell.
git control of my key configuration files (neovim, spacemacs, and tmux)
(ryoung mod, GPU version) CoNNECT: Convolutional Neural Network for Estimating synaptic Connectivity from spike Trains. Endo et al., bioRxiv (2020).
ryoung's current data processing pipeline in Jadhav Lab
(ryoung mods) A general framework for interpreting wide-band neural activity
Julia based Data Interface for my electrophysiology and behavior data. All data types are Tidy Data based DataFrame objects (rows=samples, cols=properties of samples)
This package split from a much larger git repo that comprised my julia lab code environment. Contains my homebrew utilties used on DI.jl based neural data analysis. Short one-off functions I lean on to save time often go here.
Dynamic Time Warping (DTW) and related algorithms in Julia, at Julia speeds
CLI for embedding (RY's)
Code for our goal pursuit maze.
ryoungs fork -- storing commonly used CLI prompts ----- fabric is an open-source framework for augmenting humans using AI. It provides a modular framework for solving specific problems using a crowdsourced set of AI prompts that can be used anywhere.
Machine Learning for Olfactory datasets -- "G_raph I_nference for N_oses". Downstream goal: odorant mixtures. (ryan's code)
ry's fork of github2file :: modified for multi-file type and allowing local zip file input ... useful for passing githubrepo to gemini/claude/etc
A GLM based approach to measure CFC
List of scripts and functions used to pry future-past related codes in the HPC-PFC system
Turn any script into a grid search. (ryoung's library)
julia party parrot animation for funsies
Julia REPL plugin for vim/neovim
a library that focuses of metaprompting built atop core conversations exported from google ai studio.
(๐๐ Vastly simplifies working with filter-framework datafiles...๐๐ก) Collection of core tools I've built to deal with fillter framework and nd branched cell types in JLab.
ryoung mods, Real time transcription with OpenAI Whisper.
Converts moutainsorted clusters to phy for curation using SpikeInterface. Includes a plugin to add mountainsort cluster metrics to phy.
Scrubs data from Muse EEG headset into a Tidy Data format. https://www.wikiwand.com/en/Tidy_data
RY's module for real-time, closed-loop interruption of brain activity --- detects theta (or beta) phase and triggering optogenetic disruption using the SpikeGadgets software environment (https://spikegadgets.com/)
Contains Julia code for a large variety of analyses, from manifolds, to pseudocausality, to TCA, to time-shifted receptive field analyses.
(ryoung mods) Powerful convenience for Julia visualizations and data analysis
(ryoung mods) A python package for modelling locomotion in complex environments and spatially/velocity selective cell activity.