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bionitio-python

Demonstrating best practices for bioinformatics command line tools

bivalvefiltration

ci-spliceai__annotation

Annotation of splice disruptions using CI-SpliceAI

co-splicingindices

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

fastqfilterbymotif

genepanelvariantcallingsmk

genescanner

hap.py

Haplotype VCF comparison tools

hipred

ideeps

inferring sequence-structure motifs using deep learning

lintegrater

lncrnatargets

Finding mRNA exon targets of lncRNA

meiosisvigs

microarrayde

Microarray project to find differentially expressed genes after addition of miR-203 to cells.

mrbait

Pipeline for universal design of target-enrichment probes from various sources of genomic data.

pangenomeconservedsites

primerg

Deep-sequencing primer design for multiple CRISPR-Cas targets on a continuous genome

repdna

repDNA is a Python package to generate various features of DNA sequences incorporating physicochemical properties and sequence-order effects.

rosalind

spliceai

A deep learning-based tool to identify splice variants

transposonhuntngs

Hunting for transposons inserted into the yeast genome.