4ureliek Goto Github PK
Name: Aurelie Kapusta
Type: User
Company: Illumina
Bio: Python / Infectious Diseases / Genome Dynamics & Evolution / Metagenomics / Transposable Elements.
Twitter: 4urelie
Location: United States
Aurelie Kapusta's Projects
4ureliek.github.io
bact_genomics
Accessory scripts for bacterial comparative genomics
delget
Get micro and midsize deletions specific to 2+ closely related species after their split
fasta
Perl scripts dealing with fasta files
maf_parsing
Get micro deletion amounts to place rates on a tree, from a .maf file
parsing-repeatmasker-outputs
Few scripts facilitating the extraction of info from Repeat Masker .out files
ratite-genomics
Scripts and other material for the assembly and analysis of ratite genomes.
reannte
Scripts to help transposable elements consensus sequences curation
teanalysis
Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
teorthology
Script to help assessing the evolutionary history of a TE family
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