444thliao Goto Github PK
Name: Tianhua Liao
Type: User
Company: CUHK
Bio: Mal De Coucoun// PhD student of CUHK// major in biology and devote to solve bioinformatic problems.
Location: CHINA
Tianhua Liao's Projects
16s_based_qiime2
16s pipelines based on qiime2-2019.1 artifact API
algorithm-visualizer
:fireworks:Interactive Online Platform that Visualizes Algorithms from Code
algorithms_in_python
alitv_python_interface
amplicon_workflow
amplicon analysisng pipelines based on luigi with qiime2-dada2/ qiime2-deblur/vsearch/usearch
anammox-origin
Dated the origin time of anammox bacteria with latest genomical sequences from NCBI
aob-origin
coral_color_quantization
color quantization for a coral image
cuhk-phd-thesis-template
CUHK PhD Thesis Template
d2l-zh
《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被55个国家的300所大学用于教学。
dnafeaturesviewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
dysfunctional_dectector
dysfunctional_dectector
evol_tk
some scripts for evolution analysis
ezbiocloudmatcher
figtree.js
Phylogenetic tree library for JavaScript/Node.js
isescan
A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
marvel
MARVEL: Metagenomic Analyses and Retrieval of Viral ELements
micomplete
Weighted quality evaluation of assembled genomes
microbeannotator
Pipeline for metabolic annotation of microbial genomes
microbiome_utils
Useful and efficient tools for microbiome within out research groups.
mummer2circos
Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
my_toolkit
Some scripts for myself (no documents)
mypage
personal website
ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
nifh_amplicons_analysis
Analysis SRA runs relative to nifH ampliconds
pangenome_workflow
luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, and finally perform pangenome analysis(roary).
phigaro
Phigaro is a scalable command-line tool for predictions phages and prophages from nucleid acid sequences (including metagenomes) and is based on phage genes HMMs and a smoothing window algorithm.
plascad
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
popcogent
Microbial Populations as Clusters Of Gene Transfer
primerserver2
PrimerServer2: a high-throughput primer design and specificity-checking platform
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