Parallel processing in python for the whole exome sequencing pipeline
There is two main python files in the bin directory.
- wes.py : Full pipeline paralelization
- slurm.py : SLURM calls helper
You can edit and execute the wes.py script but for simplicity I have divided into two diferent scripts,
- preproc.py : Manage all individual pipelines and build the individual VCFs
- vcf_proc.py : Combines individual VCF files into a single VCF with all info
- Docs!