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adaptmcmc

R package that provides an implementation of the generic adaptive Monte Carlo Markov chain sampler proposed by Vihola (2011).

bayesvalidate

:exclamation: This is a read-only mirror of the CRAN R package repository. BayesValidate — BayesValidate Package

benchtable

R-package executing in a parallel a user-defined function on each line of a data.table and storing the result into a new column. The package automates the generation of a job-submission script for executing on a cluster.

binarypoissonusingsplitt

estimating-pathogen-trait-heritability

A Practical Guide to Estimating the Heritability of Pathogen Traits (Supplementary programs and data)

mgpmmammals

mgpmsimulations

patherit

Pathogen Trait Heritability

pcmbase

An R-package for specification, simulation and likelihood calculation of phylogenetic comparative models

pcmbasecpp

An R-package with Rcpp-modules for fast likelihood calculation of Gaussian phylogenetic models

pcmbayes

An R-package for Bayesian inference of multivariate Gaussian phylogenetic models with shifts

pcmfit

An R-package for maximum likelihood inference of Gaussian phylogenetic models with shifts

pcmview

Advanced Visualization of Phylogenetic Comparative Models

pkgdown

Generate static html documentation for an R package

pmmusingsplitt

An example R-package using the SPLITT library to calculate the likelihood of a phylogenetic mixed model (PMM).

poumm

An R-package implementing the univariate Phylogenetic Ornstein-Uhlenbeck Mixed Model

splitt

A one-header C++ template library for Serial and Parallel LIneage Traversal of Trees

splitt-old

Serial and Parallel LIneage Traversal of Trees

testpcmfit

Simulated and real data tests for the PCMFit package

the-structured-coalescent

The structured coalescent without the need to sample migration histories

threepointusingsplitt

Parallel implementation of the three point structure algorithm for calculating quadratic forms and inverted matrices

toyepidemic

An R package for simulating within-host and between-host dynamics during epidemics

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