Roger Pique-Regi's Projects
A powerful toolset for genome arithmetic.
Burrow-Wheeler Aligner
cutadapt removes adapter sequences from DNA sequencing reads
Demultiplexing pipeline with demuxlet for the preeclampsia project (hg38)
Dallas One-Wire temp sensor DS18XXX Particle Photon
DNAnexus platform client libraries.
Really real-time collaborative document editing for the rest of us
Small utilities for working with fastq sequence files.
Functional genomics and genome-wide association studies
Fast segmentation tool for copy number detection analysis in C
A comprehensive tutorial about GWAS and PRS
kallisto|bustools workflow for pre-processing single-cell RNA-seq data
A standalone and lightweight C library
MACS -- Model-based Analysis of ChIP-Seq
Arduino library for interfacing with MAX6675 thermocouple amplifier
evented I/O for v8 javascript
DS18B20/DS18S20 library with support for multiple sensors
Make-like wrapper for job scheduling on PBS systems.
DHT Sensor Library for Spark Core
A comprehensive 10-page probability cheatsheet that covers a semester's worth of introduction to probability.
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data
rpique website
Shiny apps for teaching Population Genetics
Adafruit MAX31885 Library ported to Spark Core
Adapting Adafruit Arduino MAX6675 for Spark, following SparkMAX31855 as example
StarCluster is a utility for creating and managing computing clusters hosted on Amazon's Elastic Compute Cloud (EC2).