Name: Hiep C. Nguyen, M.D., Ph.D.
Type: User
Company: Dana-Farber Cancer Institute - Harvard Medical School
Bio: Research Fellow in Medicine ||
Dana-Farber Cancer Institute ||
Harvard Medical School
Twitter: DrNguyenhiep
Location: Boston, MA, US
Blog: https://scholar.google.com/citations?user=1V91zsAAAAAJ&hl=en&oi=ao
Hiep C. Nguyen, M.D., Ph.D.'s Projects
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
A workshop for biologists preparing to run their first single-cell RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners!
Assorted collection of QuPath scripts, likely between 2022 and 2023
python driver to control MPDSnCxx AOTF devices
Alpha and beta diversity measures for community ecology
Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
for YouTube Channel
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Client for the Bioconductor AnnotationHub web resource
Applied Computational Genomics Course at UU: Spring 2020
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
AWARE: Contextualizing protein representations using deep learning on interactomes and single-cell experiments
A curated list of awesome deep learning applications in the field of computational biology
BART risk predictor (experimental)
Supplementary files for my book, "Bioinformatics Data Skills"
bedtools - the swiss army knife for genome arithmetic
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.
BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA
BWK awk modified for biological data
A unifying framework for biomedical research knowledge graphs
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)