Comments (7)
I would also be happy to extend the API to ananke!
from pywhy-graphs.
I think based on today's discussion, this seems pretty high value. So I'ma start chipping away at this. Happy to review PR related to ananke.
Re all these packages btw, we'll only add them as soft dependencies for unit-testing purposes. This will go into the poetry group test
in the pyproject.toml
file
from pywhy-graphs.
Will get started on this later this week, on the ananke side I need to remove a hard dependency on graphviz
and make sure that didn't break anything.
from pywhy-graphs.
Is there a rough sketch of how the api should look? Presumably we want to expose a set of functions that all look and behave roughly the same. One idea that comes to mind is the pandas export functionality, where df.to_<format>()
is the pattern.
from pywhy-graphs.
Is there a rough sketch of how the api should look? Presumably we want to expose a set of functions that all look and behave roughly the same. One idea that comes to mind is the pandas export functionality, where
df.to_<format>()
is the pattern.
Currently, I have a functional API, which is just graph_to_<format>
and <format>_to_graph
. We can add more convenience once we have the working functions.
Will get started on this later this week, on the ananke side I need to remove a hard dependency on
graphviz
and make sure that didn't break anything.
You can keep it if you want, and just make ananke
an optional dependency.
from pywhy-graphs.
Everything is done that is doable except Ananke now.
Note: some of the other packages which only supports DAGs, I did not handle or implement. I think those work fine w/ nx.DiGraph for now, so community can PR that if they want it.
from pywhy-graphs.
Example about tetrad conversion and other library conversion in examples script.
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Related Issues (20)
- A function for enumerating backdoor adjustment sets in causal graphs
- A function for enumerating front-door adjustment sets
- Consistent extension of a PDAG
- "Consistent" extension of PAGs?
- Convert edge probability matrix(matrices) into consensus network
- Uncovered circle paths in PAGs
- Add support for undirected edges in m-separation HOT 5
- m-separation function does not work with only bidirected graphs HOT 1
- M-separation does not work HOT 3
- [DOC] User Guide HOT 1
- [Networkx] Rewrite internals of `MixedEdgeGraph` to have a similar API, but simplified internals
- Improve test coverage of time-series graphs such that we have at least 80-90% coverage
- [DOC] Example and Userguide section explaining the differences wrt networkx HOT 4
- Check edge types allowed given a `graph_type` passed in export functions HOT 1
- Implement pre-commit hooks
- Refactor or redesign implementation of graphs with directed and undirected edges HOT 12
- Checking the validity of a constructed PAG HOT 7
- Bug in draw brought up by researcher HOT 1
- A function to determine whether an inducing path exists between two nodes HOT 6
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