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Name: Chandan Pal
Type: User
Company: Ministry for Primary Industries (MPI), New Zealand
Location: Auckland, New Zealand
Name: Chandan Pal
Type: User
Company: Ministry for Primary Industries (MPI), New Zealand
Location: Auckland, New Zealand
Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm
Materials prepared by the instructors of the #NGSchool2016
repo for 2016 EDAMAME tutorials
Materials used during #NGSchool2017
Visualize whole genome alignments as linear maps
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts. Like our facebook page to be always updated: https://www.facebook.com/annocript
Apt-cyg, an apt-get like tool for Cygwin
Improve the quality of a denovo assembly by scaffolding and gap filling
scripts to reproduce the analysis and figures from Bai et al., Nature, 2015
scripts to reproduce the analysis and figures from Bai et al., Nature, 2015
An awesome list of high-quality datasets in public domains (on-going).
Collection of scripts for bacterial genomics
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Conda recipes for the bioconda channel.
:exclamation: This is a read-only mirror of the CRAN R package repository. BiodiversityR — Package for Community Ecology and Suitability Analysis. Homepage: http://www.r-project.org, http://www.worldagroforestry.org/resources/databases/tree-diversity-analysis
Multi-purpose bioinformatics toolbox
Just a bunch of scripts I use for bioinformatics -- feel free to use, reuse, and improve
Scripts UBC
Code for biostar tutorials - mostly R and Perl
BLASR: The PacBio® long read aligner
Download Blast databases from ftp.ncbi.nlm.nih.gov/blast/db, validate, and extract.
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
scripts to reproduce the analysis and figures from Hacquard et al., Cell Host and Microbe, 2015
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
R scripts for performing co-occurrence analyses
This is a pipeline for finding out the COG (Cluster of Orthologous Groups) distribution for a list of bacterial genomes.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.