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šŸ’« About Me:

šŸ”­ Iā€™m currently working on single-cell data processing, circRNA analysis, and identification of differentially active transcription factors
šŸ‘Æ Iā€™m looking to collaborate on an Angular package for investigating candidate genes/regions
šŸŒ± Iā€™m currently deepening my understanding of biological data and how to process them
šŸ’¬ Ask me about nf-core, dependency management, and frontend development

šŸ’» Tech Stack:

HTML5 Java JavaScript LaTeX Markdown Python R TypeScript YAML Angular Anaconda NodeJS Nginx Gunicorn Matplotlib NumPy Pandas Plotly scikit-learn Scipy TensorFlow Keras PyTorch GitHub Actions GitHub Docker Poetry

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Nico Trummer's Projects

algobio icon algobio

This project aims on making the algorithms covered in the corresponding lecture at LMU Munich easier to understand by providing step-by-step logging and result visualization.

ehmm icon ehmm

enhancer hidden Markov model for enhancer predictions based on chromatin marks.

ktplotspy icon ktplotspy

Python library for plotting Cellphonedb results. Ported from ktplots R package.

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

psirc icon psirc

Full-length linear and circular transcript isoform reconstruction and quantification

pyliftover icon pyliftover

Pure-python implementation of UCSC liftOver genome coordinate conversion

scdownstream-1 icon scdownstream-1

A single cell transcriptomics pipeline for QC, integration and making the data presentable

scvi-tools icon scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

stare icon stare

TF analysis from epigenetic and Hi-C data

test-datasets icon test-datasets

Test data to be used for automated testing with the nf-core pipelines

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