mp15 Goto Github PK
Name: Martin Pollard
Type: User
Company: Wellcome Sanger Institute
Name: Martin Pollard
Type: User
Company: Wellcome Sanger Institute
Analysis scripts for 30x vs 15x HiSeq X WGS analysis
Set of tools for working with scaffolds and AGP files
Prototype for a non-VRPipe way of running auto-ac
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
BioNanoAnalyst is a tool providing GUI to assess the genome assembly quality using BioNano data.
BLASR: The PacBio® long read aligner
Burrow-Wheeler Aligner
MP15's private working fork of bwa-mem2
mp15's working fork of codecarbon for Pull requests etc.
Martin's dev repo for DeNovoGear, expect rebases. A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)
Oxford Nanopore's Basecaller (mp15 working copy)
A programming game, where you program bots in assembly.
FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
Making diploid assembly becomes common practice for genomic study
(working copy) Detecting contamination in NGS data and multi-species analysis
A benchmark suite to study the performance characteristics of genomics applications
a phylogenetic :palm_tree: viewer for different types of :evergreen_tree: annotations
CDK builder for building graviton hosts for the benchmark suite
Pipeline to convert a haploid assembly into diploid (working copy)
Paper in preparation for work on evaluating calling on the Illumina HiSeq X
Utilities for making sense of the IMGT/HLA database
MP15's working changes to the specifications of SAM/BAM and related high-throughput sequencing file formats
Private working repo for htsjdk
C library for high-throughput sequencing data formats (MP15 private repo)
Open Source Data Management Software
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Martlet 3 Avionics
A versatile pairwise aligner for genomic and spliced nucleotide sequences
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.