Comments (2)
psathyrella
commented on September 27, 2024
whoops, yes, #82 is resolved, i added a comment.
ok I've switched the partis .gitmodules to https.
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psathyrella
commented on September 27, 2024
I don't seem to have updated this issue at the time, but I uncommented those steps here a while ago since unfortunately they weren't optional.
The underlying issue (lm.fit()) was called by coda::effectieSize() in run_bootstrap_asr_ess.R, which was calculates ess values for every column in ess.data. The crash was caused by a single NaN/inf value at the top of the LHLogLikelihood column, which I'm guessing maybe was there since this test data has a very small number of steps or something? Note that this crash only happened on this test data, at least that I'm aware of. Anyway did not investigate, just removed rows (with printed warning) with any nan/inf values which seems to fix it.
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Related Issues (20)
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