Name: marenh
Type: User
Bio: PhD student at the Institute of Medical Biometry and Statistics, interested in sciML, deep generative models, single-cell RNA-seq and all things Julia.
Twitter: marenhackenberg
Location: Freiburg, Germany
Blog: https://orcid.org/0000-0003-4403-634X
marenh's Projects
COVID-19 case count in Germany state-by-state, over time (HTTP API and CSV file)
Combining deep learning and dynamic modeling to fit individual trajectories based on very few time points
Illustrating how statistical modeling can benefit from differentiable programming in challenging modeling tasks.
Jupyter notebook giving an overview of popular dimension reduction methods for single-cell RNA-seq data.
Investigating a domain adaptation approach for integrating different measurement instruments in a longitudinal clinical registry using ODEs and VAEs
A Julia package for learning dynamics based on ODEs in the latent space of a VAE
Fitting of log linear models via iterative proportional fitting
Thesis of my M.Sc. Maths degree: "Temporal Dynamics in Generative Models" (2020)
This is the repository that accompanies the paper "Assessing the power of deep generative models for learning joint embeddings of single-cell multi-omics data."
Muon for Julia
Code notebooks and further materials for the workshop on "Differentiable programming for flexible modelling with small data" at the 8th NORBIS conference, 24-28 October 2022, Rosendal (Norway).
Extract patterns from categorical data in Julia.
A Julia package for fitting VAEs to single-cell data using count distributions.
A single-cell RNA sequencing data analysis toolkit in Julia.