karenvn Goto Github PK
Type: User
Company: University of the Witwatersrand
Twitter: karenvn
Type: User
Company: University of the Witwatersrand
Twitter: karenvn
Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. We implement the ALE approach in the context of a reconciliation model (cf. http://arxiv.org/abs/1211.4606 ), which allows for the duplication, transfer and loss of genes. We use ALE to efficiently approximate the sum of the joint likelihood over amalgamations and to find the reconciled gene tree that maximizes the joint likelihood among all such trees.
general purpose library for evaluating the likelihood of sequence evolution on trees
Bayesian Evolutionary Analysis Sampling Trees
Bayesian Evolutionary Analysis by Sampling Trees
Official git repository for Biopython (originally converted from CVS)
A repository of my Coursera latex code and notes
Cytoscape: an open source platform for network analysis and visualization
The Leek group guide to data sharing
R package containing datelife's core functionality
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
mRNAseq assembly, evaluation, and expression analysis
HMMER: biological sequence analysis using profile HMMs
MCL, the Markov Cluster algorithm, also known as Markov Clustering, is a method and program for clustering weighted or simple networks, a.k.a. graphs.
A massively parallel tool for model selection and tree inference on thousands of genes
Helper scripts for making phylogenies
A python library for phylotastic services
An open collection of Python anti-patterns and worst practices.
A tool to root phylogenies
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
This is the development home of the workflow management system Snakemake. For general information, see
Posterior summarisation in Bayesian phylogenetics
TransDecoder source
Cross-platform software to draw phylogenetic trees
Trinity RNA-Seq de novo transcriptome assembly
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.