Related Issues (20)
- Include option to create DAG in run script.
- Modular ABC file system
- Name data using names based on config file in analyze script. HOT 1
- Convert error corrected fastq files into fasta
- More options in run.py
- Fix path to snakefile/config file HOT 1
- Check for & filter chimeric reads
- Rename Snakefile to rules.smk
- Change pipeline order HOT 3
- pandas is not in dependency file HOT 1
- Outdated dependency file HOT 1
- weird construct file path input HOT 1
- Implement init command HOT 1
- Separate environment.yml file into condalock files for osx and linux
- Jupyther notebook example run
- Add travis flake8 test
- Implement pytest
- Include settings and run info in report
- Add ability to merge samples
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