Comments (4)
@teixeirak and @gonzalezeb,
Here I confirm that the allo_find()
joins census data with equations data by both species
and site
-- not just species
(relevant source code; notice Notice this: by = c("sp", "site")
).
Notice that allo_find()
outputs not site other than "scbi":
library(tidyverse)
library(fgeo.biomass)
census <- fgeo.biomass::scbi_tree1
species <- fgeo.biomass::scbi_species
census_species <- census %>%
add_species(species, "scbi")
result <- fgeo.biomass::scbi_tree1 %>%
add_species(species, site = "scbi") %>%
allo_find()
# The result has equations of multiple types
result
#> # A tibble: 5 x 2
#> eqn_type data
#> <chr> <list>
#> 1 species <tibble [8,930 x 8]>
#> 2 genus <tibble [5,642 x 8]>
#> 3 mixed_hardwood <tibble [5,516 x 8]>
#> 4 family <tibble [10,141 x 8]>
#> 5 woody_species <tibble [0 x 8]>
# But they all come from SCBI
result %>%
unnest() %>%
pull(site) %>%
unique()
#> [1] "scbi"
Created on 2019-02-28 by the reprex package (v0.2.1)
from fgeo.biomass.
Reopening to make it more visible to reviewers.
from fgeo.biomass.
@teixeirak or @gonzalezeb, can you please review and discuss or close?
from fgeo.biomass.
I'll call it done.
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Related Issues (20)
- Simplify README.Rmd HOT 1
- Remove or hide `allo_order()`
- Unnest the output of allo_find()
- Interface enhancements HOT 1
- Guess dbh units HOT 3
- Warn (once) if dead trees are detected in the census data HOT 1
- Evaluate allodb equations at dbh 1, 50, and 100
- Understand why some species have missing biomass HOT 3
- include failing ecuations and evaluate them safely()
- Move `convert_units()` out of `allo_find()`.
- Basic support for dbh-specific equations (other more specific issues follow this up) HOT 6
- Temporarily exclude generic equations until we can support them
- Support for custom_eqn
- Match species names given as Genus sp. (as in Homo sp. instead of Homo sapiens) HOT 2
- Convert `site = any temperate NA` to `<current site>`
- Let users define an unknown species to be matched with a generic equation
- Explore the biomass functions of the "CTFS R package"
- Flowchart overview
- Add full URLs to the website location of Information files
- installing fgeo.biomass error: https://forestgeo.github.io/drat/ not found HOT 1
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