Course material; Bachelor's degree in Bioinformatics
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10/07/2020: Please see below in the grading section for new exam dates.
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07/05/2020: Please fill out the OPIS questionnaire; the OPIS code for this course is QBQL2G5A. Click here for instructions.
Lecturer: Prof. Emanuele Rodolà
When: Tuesdays 10:00--12:00 and Thursdays 10:00--13:00
Where: Classroom Psicologia II
Office Hours: By appointment, contact Prof. Rodolà
Formally: None.
Welcome: Programming fundamentals.
Specific material in the form of scientific articles and book chapters will be given throughout the lectures.
Oral examination.
The exam dates are in the range 13-24 July. Please register on infostud, and contact the Professor to fix a specific date and time.
The exam will cover all the aspects seen during the lectures, including the homework. The homework is optional but contributes to the final grading.
| Date | Topic | Reading | Code & Data |
|---|---|---|---|
| Tue 03 Mar | Introduction | slides | |
| Tue 10 Mar | Insertion sort | slides ; video | |
| Thu 12 Mar | Divide et impera | slides ; video | |
| Tue 17 Mar | Growth of functions | slides ; video | exercises 1-5 ; python docs ; video |
| Thu 19 Mar | Recursion I | slides ; video | |
| Tue 24 Mar | Recursion II | slides ; video | |
| Thu 26 Mar | Heaps and priority queues | slides ; video | |
| Tue 31 Mar | Stacks, queues, and linked lists | slides ; video | |
| Thu 02 Apr | Graphs, breadth- and depth-first search | slides ; video | |
| Tue 07 Apr | Code: Data structures | code ; video | |
| Thu 16 Apr | Shortest paths | slides ; video | demo video |
| Tue 21 Apr | Midterm self-evaluation | test | |
| Thu 23 Apr | Self-evaluation solutions | ||
| Thu 30 Apr | Clustering | slides ; video | demo video ; R15 ; spiral ; jain ; more datasets |
| Tue 05 May | Dimensionality reduction | slides ; video | |
| Thu 07 May | Decision trees and random forests | slides ; video | demo video |
| Tue 12 May | Deep learning | slides ; video | |
| Thu 14 May | Spectral graph analysis | slides ; video | minnesota graph |
| Thu 21 May | Local sequence alignment | paper with notes ; video | |
| Tue 26 May | Recap | video | |
End
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent