envgen Goto Github PK
Name: Environmental Genomics Group SciLifeLab/KTH Stockholm
Type: Organization
Location: KTH / Science for Life Laboratory
Blog: http://envgen.github.io/
Name: Environmental Genomics Group SciLifeLab/KTH Stockholm
Type: Organization
Location: KTH / Science for Life Laboratory
Blog: http://envgen.github.io/
Tracking of annotation and analysis of Moose Microbiome
Metagenomics on sea floor sediment.
A set of tools that are useful to reuse the Baltic Sea Reference Metagenome
Baltic sea Reference Metagenome web server
A repository to keep track of the generation and preliminary analysis of the BAltic sea Refernce Metagenome
Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009). Community-wide analysis of microbial genome sequence signatures. Genome Biology, 10: R85
The bioinformatics pipeline used in the BLUEPRINT project
This repo is used for running the blueprint pipeline.
Computational Protocols
A template repository for starting a new binning project using the snakemake-workflows.
A demo for the cookiecutter-binning-project repository.
A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
The Environmental Genomics Home Page
collaborative scripting forn the euk_popgen project
Rshiny app - Gene catalog using mix-assembly approach
The Environmental Genomic Group also does lab work. This is how we do it.
Metagenomics Workshop
Mix_assembly gene catalog pipeline
Phylogeny-based Ortholog-trait Linkage pipeline
Population genomics from metagenomes
A directory to keep snakemake rules for preprocessing metagenomic reads
Rapid prokaryotic genome annotation
Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.
Various scripts used at the EnvGen group, directed towards metagenomic analysis.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.