donfreed Goto Github PK
Name: Don Freed
Type: User
Company: Sentieon
Name: Don Freed
Type: User
Company: Sentieon
Scripts for creating gVCF files for 1000 genomes data using StarCluster.
Scripts used in benchmarking Sentieon DNAseq and DNAscope pipelines on Azure
Conda recipes for the bioconda channel.
A test repository for GitHub actions
A simple tool for identifying *de novo* variants from a VCF/BCF file.
Official code repository for GATK versions 4 and up
Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
C library for high-throughput sequencing data formats
Detect mosaic variants using barcode information
POC Nextflow pipeline to run Sentieon software
AWS Blog (Somatic Variant Calling )
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Simple Dynamic Strings library for C
Run Sentieon pipelines on Google Cloud Platform
Helper scripts for biological data processing from Sentieon
This is the development home of the workflow management system Snakemake. For general information, see
Combined mixing and subsampling for simulation of mosaic variants.
Terraform configuration files for the Sentieon software
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
Add a variant segregation metric to a VCF file.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.