Dhananjay Bhaskar's Projects
Archetypal Analysis network (AAnet)
AMS Agent-Based Modeling Workshop
A curated list of topological data analysis (TDA) resources and links.
Agent-based models, image segmentation and TDA for doctoral research at BrownU
GitHub repository for the ICLR Computational Geometry & Topology Challenge 2021
Personal academic website
Reconstruct fMRI from MEG and vice-versa
GEFMAP leverages the graph structure of metabolic networks to learn the metabolic objective of cells and estimate relative flux rates of reactions
Search for hostnames and IP addresses in large log files
Selected LaTeX documents to serve as templates for future reference
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
Implementation of metaheuristic algorithms and empirical analysis
Trajectory inference for single-cell sequencing data
Using ParamILS to configure memetic particle swarm optimization algorithm
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
Modelling (CompuCell3D, CHASTE & CellProfiler) and image analysis for M.Sc. thesis at UBC
SAUCIE (Sparse Autoencoder for Unsupervised Clustering, Imputation, and Embedding) is a deep neural network to process and extract structure from scRNA-seq and CyTOF data, addressing challenges like noise, complexity, sparsity, and batch effects
Server setup and administration
Framework for creating LWJGL games using Box2D Physics Engine
Summer Workshop (GNU/Linux, version control, Python, R, distributed computing)
Topological data analysis of Zebrafish skin pigmentation patterns