cmc-aau Goto Github PK

ampproc

Illumina sequenced amplicon reads processing workflow

ansible-role-lmod

deploys Lmod

autotax

Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples

biocloud-docs

Documentation website for our HPC cluster (and the likes)

biocloud-software

Repo for all sorts of software, mainly modules or containers

biowide_net

deepops

Used for BioCloud provisioning, don't edit

learn-git

Practice using git(hub)

mfd-data

Nextcloud for sharing data

mfd_hab_class

Repo for MFD Ontology habitat classification using microbial fingerprint

mfd_metadata

Metadata cleaning and report making for the Microflora Danica project

mfd_novelty_section

This is a repo for the novelty section of the MFD paper 1.

mfd_plasmid_classification

...

mfd_sr_mags

Repository for phylogenetic overview of short-read MAGs from the Microflora Danica project

mfd_wiki

Wiki of the Microflora Danica project

miseq_testbarcodes

Test an Illumina MiSEQ run for cross-talk and sample bleedover

nanopore_16samp

Snakemake workflow to process 16S nanopore amplicon sequences (of any length) and produce an abundance table including taxonomy

ood-ansible

An ansible role for Open Ondemand

ps_script

rstudio_server_setup

A guide on how to install RStudio Server on any Linux VM/machine

slurm_tools

My tools for the Slurm HPC workload manager

snakemake_project_template

Testing snakemake

split_overlapping_regions