please add block.GetChrLabel() about sibelia HOT 24 CLOSED

There is a field chrList_ in the class OutputGenerator, block.GetChr() is the index of the chromoome in chrList_

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Can you make it as block's method?

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And struct FASTARecord has field description which is read sequence header

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Ok, I will add this as block's method.

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Thanx.

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See BlockInstance::GetChrInstance() method

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block.GetChrInstance().GetDescription() returns something meaningless, e.g. 1|, 2|, 3| and 4| for Staphy.

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I will inspect this

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As description you can take anything from the header starting from ">" to the next whitespace.

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(excluding ">" itself)

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It is strange. On my machine GetChrInstance().GetDescription() returns normal id ("gi|150392480|ref|NC_009632.1|") of the sequence, but on d3 diagram the id is truncated as you wrote (1|, 2|, ...). It looks like d3 truncates ids. Try to cout GetDescription() to make sure that it really returns something wrong.

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Does GetDescription() really returns truncated chr header on your machine or it is chopped by d3?

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Looks like it's my fault, will fix soon.

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Soon = 5 hours.

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Today is ok.

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Please check D3 now, but looks weird.

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Maybe it is better to put chr numbers (1, 2 ...) next to the bars with coordinates and write legend somewhere aside?

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Yes, though I don't know how to do it yet :)

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How much time would it take? Can you do this by Monday? (it is so painful to extend the deadline 👿 )

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including Monday?

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Yes

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Yes

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gi 385215269 ref NC_017366 1 Adding this to every position is very space consuming. The picture looks so big.

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Yeah, so I created #49. If by Monday evening new diagram won't be ready, then we rollback to the previous version (with chr numbers and no headers at all) and release the packages.

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