Comments (14)
bgruening
commented on September 27, 2024
@ChristianKniep have you followed https://github.com/bgruening/docker-galaxy-stable#development and checked out the Ansible playbook submodule?
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ChristianKniep
commented on September 27, 2024
I forked it, thus I seem to fail on the submodule thing...
Checking it out like you discribed is getting up to speed. 👍
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ChristianKniep
commented on September 27, 2024
Not so fast... :(
TASK: [galaxyprojectdotorg.galaxyextras | Create Galaxy configuration file] ***
fatal: [localhost] => {'msg': "AnsibleUndefinedVariable: One or more undefined variables: 'supervisor_manage_nodeproxy' is undefined", 'failed': True}
fatal: [localhost] => {'msg': "AnsibleUndefinedVariable: One or more undefined variables: 'supervisor_manage_nodeproxy' is undefined", 'failed': True}
FATAL: all hosts have already failed -- aborting
PLAY RECAP ********************************************************************
to retry, use: --limit @/root/provision.retry
localhost : ok=18 changed=17 unreachable=1 failed=0
2015/05/05 17:37:11 The command [/bin/sh -c ansible-playbook /tmp/ansible/provision.yml --extra-vars galaxy_user_name=$GALAXY_USER --extra-vars galaxy_config_file=$GALAXY_CONFIG_FILE --extra-vars galaxy_config_dir=$GALAXY_CONFIG_DIR --extra-vars galaxy_job_conf_path=$GALAXY_CONFIG_JOB_CONFIG_FILE --extra-vars galaxy_job_metrics_conf_path=$GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE --tags=galaxyextras -c local && apt-get autoremove -y && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*] returned a non-zero code: 3
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bgruening
commented on September 27, 2024
@ChristianKniep it's working for me and Docker Hub is also happy.
Which Docker backend are you using? Switching might help, depending on your OS.
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ChristianKniep
commented on September 27, 2024
Ok, I will check it out when I return to galaxy. Thx
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javiernavarrofernandez
commented on September 27, 2024
@ChristianKniep I guess you solved the problem. I have exactly the same output. Any clues? I'm stuck with this... Thx!!!
TASK: [galaxyprojectdotorg.galaxyextras | Create Galaxy configuration file] ***
fatal: [localhost] => {'msg': "AnsibleUndefinedVariable: One or more undefined variables: 'supervisor_manage_nodeproxy' is undefined", 'failed': True}
fatal: [localhost] => {'msg': "AnsibleUndefinedVariable: One or more undefined variables: 'supervisor_manage_nodeproxy' is undefined", 'failed': True}
FATAL: all hosts have already failed -- aborting
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bgruening
commented on September 27, 2024
@ChristianKniep have you cloned it with submodules? It's described here: https://github.com/bgruening/docker-galaxy-stable#development
If so what can you tell me which Docker backend you are using? docker info | grep Storage
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ChristianKniep
commented on September 27, 2024
I am on boot2docker, therefore aufs.
I still get the same error:
Removing intermediate container 5bed4c8b7000
Step 18 : RUN ansible-playbook /tmp/ansible/provision.yml --extra-vars galaxy_user_name=$GALAXY_USER --extra-vars galaxy_config_file=$GALAXY_CONFIG_FILE --extra-vars galaxy_config_dir=$GALAXY_CONFIG_DIR --extra-vars galaxy_job_conf_path=$GALAXY_CONFIG_JOB_CONFIG_FILE --extra-vars galaxy_job_metrics_conf_path=$GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE --extra-vars supervisor_manage_slurm="" --tags=galaxyextras -c local && apt-get autoremove -y && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
---> Running in f62de44a0133
ERROR: found role at /tmp/ansible/roles/galaxyprojectdotorg.galaxyextras, but cannot find /tmp/ansible/roles/galaxyprojectdotorg.galaxyextras/tasks/main or /tmp/ansible/roles/galaxyprojectdotorg.galaxyextras/handlers/main or /tmp/ansible/roles/galaxyprojectdotorg.galaxyextras/vars/main or /tmp/ansible/roles/galaxyprojectdotorg.galaxyextras/defaults/main or /tmp/ansible/roles/galaxyprojectdotorg.galaxyextras/meta/main or /tmp/ansible/roles/galaxyprojectdotorg.galaxyextras/library
The command '/bin/sh -c ansible-playbook /tmp/ansible/provision.yml --extra-vars galaxy_user_name=$GALAXY_USER --extra-vars galaxy_config_file=$GALAXY_CONFIG_FILE --extra-vars galaxy_config_dir=$GALAXY_CONFIG_DIR --extra-vars galaxy_job_conf_path=$GALAXY_CONFIG_JOB_CONFIG_FILE --extra-vars galaxy_job_metrics_conf_path=$GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE --extra-vars supervisor_manage_slurm="" --tags=galaxyextras -c local && apt-get autoremove -y && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*' returned a non-zero code: 1
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bgruening
commented on September 27, 2024
Can you give me all commands you used, so I can try to reproduce it. (Un)fortunately, I'm not on OS-X ;)
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ChristianKniep
commented on September 27, 2024
I cloned your repo and build it. Nothing fancy. I din't got the FROM image, so I pulled the latest one - maybe that's where we differ?
$ docker pull toolshed/requirements
latest: Pulling from toolshed/requirements
Digest: sha256:73cc3dafd104f9c6328c36456f6c47f1ac7496ffe4e92d34096c5e8e58cba712
Status: Image is up to date for toolshed/requirements:latest
$ git clone [email protected]:bgruening/docker-galaxy-stable.git ~/src/github.com/bgruening/docker-galaxy-stable
$ cd ~/src/github.com/bgruening/docker-galaxy-stable
$ cd galaxy/
$ docker build -t bgruening/galaxy-stable .
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bgruening
commented on September 27, 2024
You need to clone this way: git clone --recursive
Please reads out documentation and the development section: https://github.com/bgruening/docker-galaxy-stable#development
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ChristianKniep
commented on September 27, 2024
Ups... now it went through... 💃
Sorry for the bother. Stupid me.
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bgruening
commented on September 27, 2024
@ChristianKniep no problem. Let me know if we can make this more obvious ... in general any feedback is appreciated :)
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javiernavarrofernandez
commented on September 27, 2024
We have got the same error using a different Docker version. We have already cloned the repo using "recursive":
git clone --recursive https://github.com/bgruening/docker-galaxy-stable.git
Docker build throws this error:
TASK: [galaxyprojectdotorg.galaxyextras | Install web related system packages] ***
skipping: [localhost]
TASK: [galaxyprojectdotorg.galaxyextras | Create Galaxy configuration file] ***
fatal: [localhost] => {'msg': "AnsibleUndefinedVariable: One or more undefined variables: 'supervisor_manage_nodeproxy' is undefined", 'failed': True}
fatal: [localhost] => {'msg': "AnsibleUndefinedVariable: One or more undefined variables: 'supervisor_manage_nodeproxy' is undefined", 'failed': True}
FATAL: all hosts have already failed -- aborting
PLAY RECAP ********************************************************************
to retry, use: --limit @/root/provision.retry
localhost : ok=19 changed=18 unreachable=1 failed=0
Docker backend:
# docker info | egrep "Version|Storage"
Server Version: 1.9.0
Storage Driver: devicemapper
Library Version: 1.02.93-RHEL7 (2015-01-28)
Kernel Version: 3.10.0-229.7.2.el7.x86_64
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