A repository of repositories containing bioinformatics tutorials.

A look at the basics of the R programming language to get you up and running on R. This bootcamp covers the following the installation of R & R Studio, the basics of R and how to read in data and inspect its contents.

A guide to the basics of R markdown and how to upload a project onto Github from R studio.

Co-occurrence analysis of AMR genes highlights the genetic location of AMR genes relative to each other across genomes. Since short read sequencing makes de novo genome assembly difficult at the site of repeated sequences, which cannot be bridged if the reads are shorter than the repeat length, we used co-occurrence analysis to overcome these limitations of short-read sequencing. Co-occurrence analysis allows for the comparison of genetic interactions across genomes. It can show which genes are carried together hinting at carriage on the same or different replicons. We ran a probabilistic analysis of gene co-occurrence to understand the genetic location of AMR genes relative to each other in short-read genomic data.